Hmm, I guess it is possible the first SATA port is bad. Do you have 2 SATA ports or 4?
If you have 4 ports, then I'd say just leave the two drives plugged into 2 of the other 3 ports. You don't have to plug them in any specific order. The first drive you install Windows onto is going to be considered the primary boot device. It doesn't depend on which port you have the drive plugged into.
System disk means a hard drive with an operating system loaded on. When you unplug all drives and don't boot to a CD or flash drive, the next in the chain is going to be the permanent storage device with the operating system on it...aka the hard drive.
Since you have the same problem with two different drives when they are plugged in the primary SATA port, I can only guess the port itself is bad.
Hope that helps.






















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