Hey there benji_fcum and welcome to the great PCHF.
The reason you are probably having this problem is because of the different file system, NTFS - FAT32.
If you want to do a fresh install then you will need to do the following:
- Boot off your Windows 98SE CD and choose option 2 - Start computer with CD-ROM support
- Once booted you will be at the DOS prompt, type FDISK and press enter.
- If it asks you to enable FAT32 then say YES, then choose option 4 which should be DELETE.
- Delete all partitions, once delete go back to the main menu and choose option 1 - Create Partition.
- You want to use the MAX available space, once done exit FDISK and it will ask you to reboot the machine.
- Once rebooted boot from the Windows 98 disk again but choose option 1 this time. It should automatically format the drive, you can then proceed to install windows.
More information on FDISK -
http://support.microsoft.com/kb/q255...22120121120120
More information on installing Windows 98 -
http://www.windows98.windowsreinstall.com/